Thank you for the added winch pics, and any additional info you can provide.
It's only fair for me to preface my remarks by saying there are many people on this forum smarter than I.
My impression is for some reason people are going away from springover conversions. Maybe it's because some owners want to forego some off road capability and install smaller tires and lower their rigs. (In the interest of full disclosure, my FJ40 has a spring over conversion that was done during my ownership.) Quite often the conversion is done in conjunction with a front shackle reversal. Doing it properly, which means a "cut and turn" of the front axle housing, is quite a bit of work and expense. I would think undoing a springover is essentially the same money and work in reverse. Sometimes too, as has been pointed out, the steering components are moved above the springs, which of course adds to the costs.
There's a youtube channel done by Proffitt's Resurrection Land Cruisers and in an early episode Jeremiah Profffit explained the benefits of the springover. If you prefer a deep dive into the process, somewhere there's a really thorough document done by Andre Shoumatoff (I'm sure I butchered the spelling) that's a good read.
The stock front shackle length is 2 3/4". It looks like your shackles are somewhat longer, so going with stock shackles would lower your FJ40 by 1/2 the difference in shackle length between your current shackles and any shorter shackle you install.
Something I would also offer for your consideration is this: The photos in your first post were taken when it was snowing lightly and I recall you mentioned you live in Connecticut. I'm originally from Northern New England and I think there is value in having an operational defroster. Presumably it was done by a previous owner, but in pic number three on page one someone has removed the defroster ducts from the windshield frame and replaced them with some bent sheet metal panels which close off defroster air to the windshield (they're painted black in photo 3). This is what it should look like.
As you've already figured out a relatively narrow, short wheelbase vehicle with a high center of gravity and weight up high is a recipe for instability.