New window seals. New windshield!View attachment 2528854View attachment 2528855View attachment 2528856View attachment 2528857
I noticed the photos of you roping the back glass in. Did you use urethane to seal the back glass and windshield to both the body-side and glass-side?
That is the factory-specified procedure. If they went in dry they will both leak and squeak when the body flexes.