Not a problem to add to the discussion, Delancy!
Things have been at a standstill with the weather. If it gets above freezing, it's raining.

So I've been working on other projects until things warm up again. March will be here before we know it.
I set where the top of the foundation should be and poured to that. A common way to mark is to pound rebar into the ground every so many feet - using a transit or level to make sure that the tops are where you want to set the top of the foundation - and then just pour to those. Or I have seen people use either a transit or laser level to check as they pour and use a rake to tamp the mortar around to get it reasonably level. But in any case, certainly not level in the sense of having a floor level or framing in a window level.
As Delancy notes, you make up the difference with mortar. A typical mortar joint is 3/8 inch. Now, you're not throwing down three to six inches of mortar to level things up!

I'd say I got things probably within an inch to maybe an inch and a half at the greatest. As I set the first row of block, I'll run the mortar heavy where the foundation is low - maybe up to an inch or so. If things are out more than that, I can make up a bit more between the first and second course (or even the third course, if necessary) and I'll still be below grade so it won't show. This is another advantage of not filling the trench the whole way up to the adjacent surface for the foundation - then the block is all above grade and you'll see your odd mortar joints.
The mortar has a compressive strength of around 1800psi for Type S and 2500psi for Type M. So "extra" mortar in the joints isn't really making the wall weaker - you've got 3/8" of mortar between all your blocks anyway. The main issue is that it is difficult to lay a block on more than 3/8" of mortar because when it is wet the weight of the block will squish it out the sides. For the first course, though, you're not worried about it squishing out the sides because it's just on top of the foundation. So you can build up a little "platform" of thicker mortar on the foundation to support the block while the mortar dries.