For posterity’s sake, I’ll list the items that need to be removed/released in order to pull the automatic transmission and transfer case out of an FJ62. I never found a “list” on Mud, but did use a few tips from others that made my removal much easier and damage free. Hopefully this is useful for someone else down the road....
Keep in mind, I did this based on the auto trans NOT going back in, I’m converting to a 5 speed manual, and this was my first transmission drop so may or may not be the most efficient way, but it worked for me...and nothin’ broke!
Not entirely in order, but you get the idea, YMMV....
- disconnect battery
- drain transmission and transfer case
- remove F & R driveshafts
- remove trans cooler lines and associated brackets (good riddance!!)
- remove starter ( +cable, ground strap, small connector)
- remove trans dipstick tube (two bolts, one connection is the upper BH bolt, so maybe do this later)
- disconnect speedo cable and ground strap at back of transfer case
- disconnect trans kick down cable from the throttle cam
- disconnect the two soft lines going to tcase vacuum shift module
- remove tcase shift lever pin/cotter pin, remove large pivot nut, remove shifter boot/cover screws inside, wiggle tcase shift lever off and out. Good idea to soak the big shifter pivot ahead of time with penetrating oil.
- Remove both front seats, center console, and front carpet. I removed the pain in the a$$ lower heater duct, but realized it’s not necessary.
- remove plastic cover on transmission shifter and remove shifter pivot nut on d-side, let linkage fall through floor
- remove trans hump cover...
....***this is a good time to separate the O2 sensor connection that runs over the top of the transmission, the O2 sensor wiring can get ripped apart when the trans drops. Careful these wires are still not trapped under the shift linkage, mine were.
- remove two inspection covers on lower BH, remove 6 flexplate/flywheel bolts through driver side inspec. cover to separate from torque converter, use a large flat blade screwdriver to advance the flex plate through lower cover to reach each bolt.
- disconnect the 3-4 electrical connectors from main wiring harness (I did this after dropping it, but made sure there was plenty of slack in wires and nothing was going to get ripped apart)
- position the jack under the trans pan, run a ratchet strap around trans and jack plate, the jack is about to hold EVERYTHING.
- remove the 8 large BH bolts, top 2 bolts are longer
- Remove the 8 crossmember to frame bolts. I left the crossmember attached to trans in order to have a large handle to control things if needed, and put a floor jack under the heavier passenger side.
- start to wiggle things loose and backwards and lower the jack. Done.
- enjoy victory beer

Didn’t really need the floor jack under the heavy side, the HF jack is pretty stout, but was solo and didn’t want that thing flopping over.
Also I didn’t jack up the truck (yet), the OME suspension gave me plenty of room to work and liked not having things so high, much easier to work on. The truck will have to be jacked up significantly to get the trans chunk and jack out from under it.