The pyrometer was acting up after that short I had and I had narrowed it down to the probe grounding out. I ordered a new probe kit and when I pulled the old wire out I found why it was grounding out.
This wire was routed with my mechanical water temp gauge line. Over time the temp line melted into the probe wires and grounded them out. I hadn't really thought about the temp gauge line getting that hot but obviously it does so I rerouted my temp line away from everything else and ended up routing my probe wires to the passenger side loom hole through the firewall. I had to open up this hole next to the driver side firewall hole a little so that the fitting on the end of the temp line could pass through the firewall. Then I found a grommet close enough to work.
I inspected anything else this temp line may have been touching. Found a nick in my total boost line caused by heat which helped explain why the gauge wasn't quite as smooth lately.
I found some air brake line in 1/8" size at a local napa store at $.69 a foot. I only needed 6 feet so this was cheaper than buying a boost line kit. Got that fixed too.
I was still plagued by a weird boost condition that I originally thought was the injection pump dumping fuel into the crankcase through the front seal. After the IP seal replacement the problem continued. When I get to about 3/4 throttle and into the 40psi range for total boost I would see both boost gauges drop pressure and power go down. It seemed to be getting worse and started doing this sub 40psi. My goal of 50psi had become unattainable. The weird thing is if I let off the throttle and then reapplied (not as much) boost would return and be strong under that threshold. I checked all intake clamps and could not find any boost leaks, especially any that would "reseal" and hold boost again. Nor was I seeing a black cloud behind me like I've seen before when I've popped off a intake joint.
I figured it could be fuel related and thought I found a cause with my fuel line into my lift pump. Maybe the angle on the line was pinching it shut with the lift pump demanding more fuel and the engine rocking up on this side when torqueing.
I attempted to hold the hose open with zip ties as a test. Same thing happened. I found and angled hose bare instead to replace the straight one I installed originally.
I put that in and angled the fuel line so it wouldn't kink like I thought it might be.
Same boost issue happened so this wasn't the culprit.
I had been playing around with different springs on the small turbo's wastegate and recently fixed the wastegate shut for some testing. I swapped that around but it didn't stop the boost drop so this wasn't the culprit either.
I started to worry about the internals of the injection pump but it starts great and runs great; no signs that the pump is having problems. I took a friend for a ride to get some other eyes and idea's. We finally noticed that when boost would drop the large turbo would go to zero while the total boost gauge would go to about 20psi. What this told us is that the larger turbo was making no boost and the small turbo was making whatever we were reading on the total boost gauge. But sure enough, let off the throttle and then reapply and both turbos would spool up. After some discussion we concluded that the problem could be in the large turbo. The HE351VE does not have a wastegate that could be opening up and since I fixed the vanes those couldn't be opening up either. We figured it might be the compressor wheel slipping at a certain boost pressure; the shaft nut could be loose, at least loose enough to slip at a certain pressure but not slip when under that pressure. This seemed like an easy fix to test and I didn't need to take the turbo out to do this. After removing stuff in the way I removed the compressor wheel nut, put some lock tight on it and put it back on. I was trying to be careful about how much to tighten it up but it didn't feel tight enough so I added a little more, and then a little more which ended up ruining the rest of my weekend.
After the appropriate words jumped out of my mouth and a plastic lawn chair had been sacrificed by my right foot, turbo guts littered my workbench.
I thought I might had found a lucky break in my turbo scrap box when I found a turbine wheel in good shape with identical measurements. All except for one little detail. The find is on the left and the original is on the right. Notice that the base of the blades have a different height. This small 2mm difference doesn't allow the exhaust housing to fully seat. That part touches and you don't want any part of the wheel to touch any part of the housing. So this other wheel wasn't going to work. After a talk with the

I was allowed to bleed some more funds from a house project and order parts.
With the turbo's apart I've ordered a new turbine wheel for the large turbo and rebuild kits for both. I'm hoping to have those by the end of the week for a Saturday project. While the truck is down I have also dropped off my injectors to get the pop pressures reset to 255bar. Sometimes all we can do is keep on wrenching.