There is a very easy solution for wet floorboards: pull one of the two body screws holding the rear corner of the fender onto the body. You only need one. That will drain the pocket. If you depend on the rocker panel drains, you may be waiting awhile.
If the drain tubes are not really clean, they will eventually fill up enough that water will back up into the sunroof pan, and that will leak. The only way to really clean those tubes, and you really only need to clean the front two, is to remove them and run a brush through them. Yes, you can run string trimmer line in them, but it won't clean them, it'll only clear them.
The front drains empty into a pocket between two sealed body panels. The rear drains exit through the fenders and discharge into free air. They never clog. It's pretty easy to see why.
Toyota's plan was to have the front drain tubes discharge into the pockets, and when the pocket had filled up (hopefully not to the level of the wiring harness connectors installed in those very same pockets!), the water would overflow into a channel leading into the rocker panels, which would then drain via pinch drains between the inner and outer rocker panel sheets. In the event that the pinch drains ever plugged (no, that never, ever happens), Toyota installed removable plugs in the rocker panels to allow (some of) the water to drain out.
The long term solution to leaking roof drains is to replace the front drain tubes with rear drain tubes, and run them though one of the body mount holes that secure the front fender trailing edge. This is the solution Toyota finally used to fix the problem on later models.
This sounds like a lot of work, but it can be done in a weekend, provided you have the parts (spare rear drain tubes).
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Photo is driver's side, front is left, rear is right, in the photo. The running board forward edge is immediately forward of the bolts. Doesn't matter which you remove; there is another, hidden, about a foot forward and 6 inches up, on the firewall. There's no danger of the loosening at all. This is my DD and it's been this way since 2017.