I'm in the midst of replacing all the wheel cylinders on my '73 FJ40, so I've become quite familiar with the wheel cylinder differences.
First, this applies to front cylinders for FJ40 models 9/71 - 9/75 and rear cylinders for FJ40 models 9/71 - 7/80, stock configurations. I don't know about FJ45's or FJ55's.
REAR
Rear wheel cylinders do indeed consist of four different items, all four with 7/8" bore diameters. The driver's side (Left) front and rear wheel cylinders both have right hand thread adjusters. The passenger's side (Right) both have left hand thread adjusters. Both left and right FRONT wheel cylinders have two ports, one port for the bleeder screw, the second port for the brake tube jumper supply line from the REAR cylinder in the same location. Both left and right REAR wheel cylinders have two ports, one for the jumper tube to the FRONT cylinder, the second for the brake tube supply line coming off of the rear axle housing.
Summary:
Rear Left Front (RLF): Right Hand Thread, bleeder, tube
Rear Left Rear (RLR): Right Hand Thread, tube, tube
Rear Right Front (RRF): Left Hand Thread, bleeder, tube
Rear Right Rear (RRR): Left Hand Thread, tube, tube
Special note: the jumper brake tube between the front and rear wheel cylinders is still available from Toyota for about $8 - 9 each. With the tight radius near the ends, this is a bargain. Beno was able to get them for me.
FRONT
Front wheel cylinders are easier. There are two different styles of front wheel cylinders, one style for the Driver's side, the other style for the passenger's side. All four have 1 1/4" bore diameters. Once again, Driver's side cylinder adjusters are RH thread, Passenger's side are LH thread. As noted above, wheel cylinders for the same wheel are identical.
Summary:
Front Left Front (FLF): Right Hand Thread, bleeder, tube; same as FLR
Front Left Rear (FLR): Right Hand Thread, bleeder, tube; same as FLF
Front Right Front (FRF): Left Hand Thread, bleeder, tube; same as FRR
Front Right Rear (FRR): Left Hand Thread, bleeder, tube; same as FRF
Other issues:
The 'slots' on the OEM wheel cylinders that the brake shoes fit into are 'indexed' so the brake shoes may only be mounted in one direction. The adjuster-end slot is wider to accommodate the 'wide' footed end of the brake shoe, while the opposite end of the same wheel cylinder is narrower to only accept the 'narrow' footed end of the brake shoe. Many of the aftermarket wheel cylinders (from painful, personal experience) may not have the wide slot. The 'solution' is seek out the correct wheel cylinders with wide slots, or salvage the wide-slotted adjusters from the OEM cylinders for re-use in the new cylinders (if the threads are the same) or, to defeat Toyota's "safety interlock" and grind down the sides of the wide foot until it fits.
I hope this helps anyone in the process of rebuilding wheel cylinders.