I park with front end higher than rear. Then power wash with engine running, from cold start up (best) or warm (not a hot engine). This way cold water doesn't shock hot parts, and w/front end higher water runs to back of engine. With the VVT intake manifold, we don't get "as much" water into the engine valley, as we do with non VVT. But in either, water will drain back, and out valley drains just below stater. I then (while wet) blow of with shop air (HP air). I then drive for a few minutes if I can, to aid in drying. If I still see sand/muck, I don't just excepts, I repeat. I use shop air again, before loosening intake manifold bolts once dry.
The top PS side of engine is covered somewhat by the air pipe/box. It's a little harder to wash. But it also doesn't tend to get as dirty. Most times I get it clean, with air pipe/box on. But sometimes, I must remove air pipe/box and clover all opens. I can't run engine, while washing in those cases. But that's okay. I just drive after to aid in drying.
Watch out for old coil top seals, they shrink. Which may allow water entry into spark plug tubes. The water is not the issues so much, as it will evaporate in tubes of hot running engine. It's the dust & sand it carries into spark tubes, which falls into cylinder when we change spark plugs. One good reason to replace coil boots and seal, the earlier of, every 90K miles or 7 years w/T-belt service.
I also had a case, where intake manifold bots were not tighten. Likely some starter job in the past, someone forgot to torque them. In this case RPMs changed as water hit area. In part because water reduced vacuum leak. So I do tend to at least glance at bolts or put a wrench on them, to make sure tight. As water here, can also wash dust/sand into to intake ports.
I vacuum out, any spec I see in intake ports, once manifold off. I carefully fill intake ports of head with shop towels, to keep dust/sand/muck out as a work and clean gasket surfaces areas. Before assembly, I vacuum out shop towels. I also get my head/eyes over top engine, so I can see down into each intake port with a flashlight. I then vacuum each port out, of any spec I see.
The muck in/on the intake ports walls of heads. I do not disturb anymore than I must. As I've concern with chunks falling in, but some guys do wipe out with gasoline. But I've found by running a multiple fuel system cleans; 44k, Chevron techron, Sea foam and Cataclean, per pulling intake manifold. Those ports gets cleaned very nicely.
I'm very mindful of any contact bottom of intake manifold during install, with engine parts. The rubber gaskets is held in bottom of intake manifold, with it's rubber tabs. It's very easy to nick the rubber gasket, which can result in vacuum leak. One thing I find useful, is before removal of intake manifold. Bend the engine hoist hooks outward a little. This gives more room to pull and install, the intake manifold. It's those hoist hooks, I fine cause the most nicks in gasket. I keep extra gasket on hand, just for this.