YMMV, but I replaced every single bushing and suspension component on the truck and all of that gave me only marginal improvement. I suspect now most of my clunk is coming from the front diff itself. I recently mailed it off to have a front locker installed, where the bearings will be changed out and the lash will be re-set to factory spec, I'm anticipating this fixing my problem. We'll see soon.
After all of my work, having replaced literally everything on the suspension side and the drive line side, adding lockers to both front and rear bringing lash back into factory spec on everything, I have zero clunk when changing speeds or starting from a stop. Shifting from D to R or R to D there is still a little clunk but it's minimal enough now to both feel and sound very normal for a truck. Not "new" feeling, but close enough that I no longer cringe when I shift waiting for the sound or jolt from the clunk.