Hi csd-
I see conflicting things going on there......you have a front 9.5"....you said it was an 89 FJ62 3rd......Sierra Gears which are good gears.....you should see a good pattern with .055~.060".
First, get about 10~20 INCH/POUNDS on the pinion preload alone.....then install the main center carrier and crank some Carrier Bearing PreLoad CBPL in there and adjust your backlash to the same .006" you originally used.
You don't really have to measure the total preload but you need need some "tightness" on the carrier bearings for the paint test. After your wheel adjusters are set to your satisfaction then tap on the sides of the bearing caps to "equalize" the tensions on both carrier bearings and then verify your backlash again to make sure it has not changed drastically.
Here's the simple way to get a good readable pattern......paint 3 teeth....then hold pinion flange with a rag to offer some resistance....then turn the ring gear with a 19mm wrench. Wipe it back and forth 3 or 4 times holding plenty of tension on the rag. You will get the best possible wipe and pattern presentation that way.
I think Sierra gears like 007 backlash minimum....it's scribed on the ring gear.
Ken