Update from my side. Still going crazy here, but haven't given up the fight just yet.
Front Bearings: Replaced my front bearings with new Koyos. Seemed to help with steering wheel vibes, but still have the highway vibrations that run through the cabin.
Chassis Ears: I bought a set of Steelman chassis ears. I've tried clipping them in a few different places. Hubs, diffs, trans, engine, rear axle, etc.. The noise they transmit back is medium to high frequency which makes it hard to isolate things like booming vibrations. When I clip them to the diffs and TC you can hear differences in the gear engagements when getting on and off throttle. But I think this is just normal gear engagement? Open to any tips here.
Pinon Angle: I'm back on this one again. I bought one of those little angle measurement tools. It seems like the TC is pointed up ~0.5% and my rear diff is also pointed up ~0.5%. From what I've read they either need to be dead 0.0 each or equal and opposite. So if the TC is 0.5% up, the rear diff needs to be 0.5% down. So maybe this is an issue?
I've also read that most people normally have their TC pointing down a touch? Not sure why mine is pointing 0.5% up? I've replaced both the engine and trans mounts. Maybe they are too new and stiff? Also wondering if maybe my cross brace that holds the trans mount is bent?
I also see tons of post on here of people with lifted trucks having issues with the rear pinon pointing up. But I'm bone stock here. Could my old rear sagging springs be an issue here? I'm only off by 0.5% on each direction here, but maybe? Seems like an awfully big vibration for something that is only off 1% total, but who knows!
Overall I will say this issue is killing me. Seems wild that only a few of us are having this extreme issue when new driveshafts fix it for so many others. Kind of kicking myself for dumping so much money into this truck baselining other issues when this one issue can't seemed to be fixed.