I do a lot of Toyota gear installs for local guys here. Mostly on 4runners/Tacomas, but have done a bunch of LC ones as well.
I agree that the bolt retaining clips are an overkill, and are probably not necessary in majority of the cases. However it would really suck to be that rare case when they were indeed needed and not used(like the OP here). Im not sure if he ended up reusing the ARB case and the gears, but either way that's a very expensive repair for something that could've been prevented by using the original retaining clips.
As I've said earlier, it adds almost no cost/time to the install and there is ABSOLUTELY no reason not to use them.
To be fair, i've never installed the ARB carrier into one of these, and it looks like the design of the carrier would prevent the original clips from being used (as the back side of the carrier where the bolts go into is not flat enough)
You said that you've seen 2 thirds where the bolts backed out with the retaining clips in place. It must've been a different design, because i dont understand how it can possibly happen on one of these diffs. The bolts are held in place by tabs that bend around the head of the bolt. There is just no way the bolts can back out, as they are physically locked from turning by the tabs.
In my personal opinion, what happened in OP's case was that the threads on the ring gear were not thoroughly cleaned. There was probably some oil left in there which prevented locktite from sticking to them.
When i install these, i always boil the ring gear in water for a few minutes (after degreasing it thoroughly with brake cleaner).