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Because you can't plug an OBDII reader into the stock location and have it read the stock computer and have it not show any codes. You are running a standalone in parallel with the stock ECU you are intercepting signals and then sending outputs to the injectors, etc. For example if you are running a MAP tune you don't have a MAF in the system, if you do it is over voltage and CEL, if you don't CEL. If you somehow put it in a section of pipe where the ECU sees the right range of voltage for that 5v sensor, the stock computer still can not send output to the injectors as they are being controlled by the standalone so CEL.
Like I said it could be done. No one has spent the money to pay a good tuner to figure out all the nuances of having the standalone send the ECU the signals it wants to keep it from sending CELS.
The best approach here would be a standalone that's plug and play with the existing ECM/TCM. Then you can have the stock ecu for on-roaf emission compliant driving and the performance standalone for track/off-road/whatever. The integrated TCM makes things more difficult, but also allows for more customization.
I'm slowly working on this with a buddy from work. We have the ECU header connector and a basic current control board for the transmission solenoids...not sure what the engine controller will be, probably a MSPro board.
Yeah but you would have to swap fuel injectors, put the MAF back in the system, etc. If you wanted to pull the standalone to test. In VA.
But I guess I have an upper hand since the OP, PM'd me. They want the truck to pass emissions in VA, and NC. NC requires OBD testing.
On-Board Diagnostic (OBD) Emissions Inspection
North Carolina is fighting ozone-forming emissions from gasoline-operated cars and light duty trucks. Inspections are conducted using the vehicle’s on-board diagnostic (OBD) system, computerized equipment installed on all new vehicles since 1996. If you live in one of these counties list you are required to have an emissions inspection.
Stock harness could be repurposed somewhat, MAP sensor could use MAF harness and connector, etc. It gets you away from needing an expensive one-off harness, just need the mating connectors to match the stock one... If you were to go coil on plug, then this wouldn't be worth the effort.
Having to pass an OBD test is definitely going to be the biggest challenge, I don't see how it's possible with stand alone engine management...from an EPA/legal standpoint.