I really hope you have no damage as I am not sure of the VVTI vs. non VVTI but here is a few pics from the night before that will give an idea of how deep the reliefs are and why I dont buy the .003" of clearance.
This is the head from my sister inlaws gx470, 2uz non vvti motor. The valve seat let go and is hanging from the valve as can be seen. It was driven all the way home like this for many miles. I think its fair to say it is hanging down more than .003".
Here is the corresponding piston which shows no real damage in the relief area. Only nick is on the side of the relief where it really had no where to go and still its a very small nick(circled in red).
I would think if there was only .003" of clearance the piston face should have been chewed up with that ring hanging off the valve. Also the valve seat itself aside from hanging around the valve does not look like it is deformed or beat up which you would also expect if there was no room and it was being crushed between the valve and piston over and over again for a few miles.
Just my $.02
This is the head from my sister inlaws gx470, 2uz non vvti motor. The valve seat let go and is hanging from the valve as can be seen. It was driven all the way home like this for many miles. I think its fair to say it is hanging down more than .003".

Here is the corresponding piston which shows no real damage in the relief area. Only nick is on the side of the relief where it really had no where to go and still its a very small nick(circled in red).

I would think if there was only .003" of clearance the piston face should have been chewed up with that ring hanging off the valve. Also the valve seat itself aside from hanging around the valve does not look like it is deformed or beat up which you would also expect if there was no room and it was being crushed between the valve and piston over and over again for a few miles.
Just my $.02
