So, I'm pretty much done. Thanks to everyone for all the help along the way. There were a few more interesting challenges. Such as, the wires I chose to go from the led light bar to the buzzer (so it will buzz when I leave the light bar on when I turn the rig off) and the wire I used for the day time running lights were the same color. So, I hooked the output of the led light bar switch up to switched power so that when I turned the LED light bar on, I back powered the ignition and the fuel pump fired up. Took me a while to figure that out. And the HAM unit is now mounted in the way of a defroster hose - so I'm going to have to sort that out. But, surprisingly, as I went through the individual systems, everything worked - that was a pleasant surprise.
All in all, I was very happy with the Painless harness. The manual is good. I went back to it over and over again as it's not until you're hooking up the horn that you really need to understand that its a negative ground that runs a relay. The printing on the wires is essential.
I did wire nut everything together first, confirmed it functioned, then cut to length, put in loom, and tucked up out of the way. That prevented more than a few unnecessary splices and tearing of hair.
I settled on the bare uninsulated barrel(butt) connectors and heat shrink tubing as the best connection and the lowest profile connection (for fitting in loom). I tried the low temperature solder connectors that are out there, look cool, but I was never happy with the connection when I was done. Where I couldn't use the uninsulated barrel connectors I used standard butt (or spade, or ring) connectors with heat shrink wrap already on. All the old, s***ty, butt connectors with just plastic around it are gone. I had to buy several boxes of good connectors, heat shrink tubing, painless powerbraid loom, electrical tape (which I didn't use a lot of - except the white electrical tape which I used to label everything in the beginning and then slowly removed as things were finally connected) and lots and lots and lots of zip ties.
There is no Toyota wiring left (except the wiper harness). And I have a spreadsheet translating painless wires to use in my rig. So, between the manual and that spreadsheet, I should be able to figure it out. There's no usable schematic any more. And maybe I should get some software and make one before I forget too much of what I did.