So the body guy said he would use a fiber glass patch to fill the holes and then paint/blend. $700 in total. I've hear conflicting opinions on using glass to fill body holes. Does anyone have experience or opinions they can share? I want to prevent my fairly clean body from rusting... will glass/paint hold up ok?
It depends on what he's actually doing and how he does it. If he's going to use fiberglass cloth and resin from behind the panel, and doesn't expose bare metal while doing so, then it will likely last until the panel gets bashed. But I doubt he can get access to the back side of every hole to do it that way.
If he roughs up the holes, exposing bare metal, and just smears in fiberglass reinforced polyester filler, and doesn't seal up the back side, then it's going to absorb water and rust from the back side out.