The belt molding at the bottom of the rear quarter windows (top of quarter panel outside) have 4-5 holes for clips that hold the molding to the quarter panel. Each clip originally had a very thin gasket which deteriorates with age, and when that happens water can leak through those holes. Most tends to go into the quarter panel cavities, but IME it can also trickle down behind the cargo area panels, over the wheel well hump, into the rear cargo area floor as well as the passenger foot wells.
Someone else just in the last day or two posted up photos showing significant rust had developed under the quarter panel window moldings, which also could cause a leak into the cargo area. Looking at the photos you just posted up that scenario doesn't appear to be your problem.