Chi-
I'm running a '98 5.7 Vortec with matching 4L60E, 4.11s, & 10.50x33 BFG MTRs. Never had to get the ECU reflashed to sync things up 'cause it runs great like it is. Goat-like 1st gear + lockup 4th OD gives me 75mph @ 2,200 rpm. Got 17 mpg on day going up I-70 to Silverthorne & back plus some around town putting (I've gotten over hot-rodding it like I did when it was 1st together: saw 95 mph once & the speedo reads about 10% low).
Not throwing any codes, but the OBDII setup is great if you have a code reader (which I do). You can diagnose problems in a hurry.
I like the Painless system 'cause it's plug-n-play with clear directions. They sell a harness specifically for your application. I had my swap done 'cause it's way out of my league with the ECU & slushbox & I don't have a lot of spare time. The shop that did the conversion insisted on the Painless harness & they certainly could have run the bill up (more!) by wiring it themselves. When I ran into problems afterwards & didn't want to mess with the shop I studied the directions & called Painless with questions. They were extremely helpful. I can't imagine splicing the Toyota & Vortec harnesses together, & I've trouble-shot my share of electricals when I was in transportation R&D.
BTW get the Downey swap manual & study it 1st: Part # 00MAN TBI/TPI Manual $25.00 bottom right corner of the page
Downey Off-Road