Ok, I've read that thread. You never stated much about condition that prompted your EFI jumper. IIRC your wife knew to wiggle fuses relays to get started. So I assume you had a no start condition perhaps immobilizer light blinking ignition on IDK.
As stated above do the tune-up (44K, TB, MAF, Air filter, battery 30min disconnect clean & grease post, check all vacuum lines & PCV valve, inspect & clean spark plug (do not change gap of used plugs)) goes a long way here. I add using dialectic grease on coil to spark plug ends & MAF sensor connecting wires pins (not sensor wire) is good practice as well.
But it's very possible your issue is related to reason you did EFI fuse jump. I've not had to deal with this issue, fortunately. I agree with some that it's a great idea, but a tempera fix. A new fuse box is most likely in order in, at some point. Could be the fix, but for now run through some basic stuff. One being fuel pressure.
A/F (Air/fuel) mixture is most common reason for rough or low idle. As you're no doubt aware there is a number of things that can effect A/F. Two main cause of fuel pressure issue:
1) Bad gas clogging up system, anywhere from fuel pick filter to injector jets. This is most often associate with the "D" vibration (rough ideal in D with foot on brake, causes a vibration sound and low idle). A can of 44K in tank, along with above tune-up goes a long way.
2) Fuel pump. Fuel pressure gauge is handy here. A quick test is to pinch off return pressure line hose (hung on clip at rear of plastic engine cover, DS) while condition exist. This "backs ups" pressure in fuel system, developing a little extra pressure. If fuel pump is weak, idle may respond (pick up). In your case, with "intermit issue" it may be useless, but worth a try. I say this because fuel pump may be getting reduce current running weak, or may have current cutting in or out. Not knowing more about your EFI mod reason. I'd add; Bad fuel pump may have been issue all along or going bad at same time of fuse box issue.
Fuel pressure may have nothing to do with your issue but well worth checking.
Anyway that you can monitor fuel pressure and/or A/F while running, like with tech stream would be helpful as well.
Eliminate or confirm fuel pressure issue, then move up the food chain to intake air then spark.
Good luck!.
Note: Fuel pumps weakens over time. Running fuel tank down after low fuel light has come, on reduce life. Pump submerged in fuel keeps it cool.