I went in today and milled the manifold.
I built a fixture and bolted the exhaust manifold to it. I then checked to make sure that it was indicated in the z axis. It was within .002" so I proceeded.
Then I adjusted the manifold from end to end to make sure that it was parallel.
The numbers on the manifold show how out of flat it was.
When I bolted it up to the block in my garage I could still fit feeler gauges thicker than .020". So the bolts would just not pull the manifold flat.
I then bolted the intake on to the exhaust and aligned it as evenly as possible.
I did it this way so that I would not introduce any stress into the setup.
For some reason I did not take an after shot.
Anyway, after the gasket face was clean. I spot faced the c-bores.
I checked the two outside ports and they seemed fine and did not need to have any machining done to them.
I ended up making some washers because I was missing two of them. I also picked up a couple bolts and nuts.
I should be able to install everything tomorrow.