It's pretty simple: Get a wad of 8mm or so vacuum hose a few T-fittings and some small zip ties. Remove the caps from the axle breathers, slip the hose over the nipple and secure with a ziptie. Run the hose along the brake line, securing with the zip ties toward the differential then use the soft brake line to run it up to the frame and leave some extra hose to connect to the hose coming from the rear.
For the trans/transfer I did the same thing (without removing either of them) using a T-fitting to join the hoses then fish a single hose over the transmission to the right frame rail and secure the the fuel line with zip ties. Now you can bring the hose from the rear diff breather forward by running it the same way as the front, using the soft brake line, to run it up to the frame and run it along the fuel line and T it to the trans/transfer hose and run it to the front hose from the front axle. Use a T to connect them and run the hose up the fire wall to the highest point you can. You can also run it into the cab if you like.
I used old brake bleeders I had laying around on the axles (they thread right in to the breather thread) and used one of the removed diff breathers at the top of the hose at the firewall to keep stuff out of the hose. I set this up 10 years ago and it's still working with no issues and I've done some deep crossings.
I did this for my FJ40, FJ62 and LX450.
HTH