Firstly - I don't think you should EVER leave the tops of your injectors (or the outlets from your injector pump) open like that - allowing the possibility for
cr@p to fall in. As soon as you remove the lines you should immediately fit plastic caps! (But I know you will be under duress at the moment Rob. - I certainly would be!)
The clearances inside injectors are so precise that no foreign material should be allowed to enter.
....the head gasket came with the kit I got from 4Wheelauto and is perfect and not blown? ...
Damn! Well there goes my No.1 theory!
...oh and in the pics, we did not drain block coolant prior to taking head off.....
Yeah. Stressful situations lead to such errors. Take it easy! Sometimes it's best to walk away for a while.
...we did a compression check this morning cold and from the firewall cylinder moving forward is as follows: 340, 360, 420, 430, and we did this twice to be sure....
Well they're all above the minimum spec. (284 psi).
Your average reading is 387.5psi and accepting that they shouldn't vary by more than 10% from this (which is by 38.75psi) that means your readings really should lie between 348.75 and 426.25. (Well this is the way I do it anyway

)
-But then you did do the tests with the engine cold.
Still .... Obviously we'd like to see cylinders 3 and 4 reading higher. And the reading suggest we should look at those cylinders.
...range from i checked the diafram and it was coated with oil on both sides but not blown, so drained it with that little screw and cleaned off...
Have you ever removed that screw before Rob?
(The diaphragm should ideally be moist with neatsfoot oil both sides. But engine oil should be
slow to accumulate in the bottom of that chamber forward of the diaphragm. It shouldn't accumulate there fast!)
But ignoring all this - I can't see how that diaphragm could be connected with this "radiator overflow event" or with "metallic particles in your oil".
Having said this - the amount of metal you show there doesn't look overly alarming to me for a recently worked-on engine. (For instance I suspect you have a new oil pump there and perhaps the teeth on that do "wear-in". But I hasten to add - that I'm no expert in this regard by any means.
...should they both be depressed down like they are in pics....
I think this is probably normal but you could have confirmed whether or not it was normal by rotating the crank and seeing if the same thing happens on your other cylinders.
.. then in the 2 cylinder form firewall look at the wired marks on cylinder walls, it is the only cylinder like this with thes emarks and in one spot there is a very slight abrasion feel? the other cylinders feel smooth and wearing all the same from what I see?...
Yes. I see an odd wear pattern there too. But isn't it really No.3 cylinder (because the numbering process should always start from the front)?
I'd pull that piston and have a look-see anyway.
.....could there be something wrong with my injectors making it run ruff, or worse yet in my IP now?....
A way to find out which cylinder is "missing" (not firing) would be to loosen the nut on the top of each injector in sequence while the engine is running. When you find one that causes no difference in the already-rough running (ie - it doesn't stall or run even rougher still) - then you have found your offending cylinder.
...I took the injector lines off completely, primed fuel filter bleeder, then bleed IP screw, then put lines back on and tried to bleed lines and it seems there is alot of pressure for it is hard to pump IP primer and agin I am getting nothing at each injector when I crack them? .....
You do realise that you CANNOT bleed at the top of the injectors using your primer-pump? You do need to have the engine turning over to bleed there. (Because that's the only way of getting the injector pump pistons to deliver fuel in that direction.)
When the primer pump becomes stiff - it is usually telling you that the circuit it is pumping fuel into - is closed.
Your primer pump can only be used to bleed air from the section of the fuel circuit between your fuel-pump-outlet and your injector pump. And the furtherest downstream point in this section is that bleed nipple on the body of your injector pump.
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