So when the issue initially arose the battery would die within a few hours after letting the motor run for a while. I replaced the battery and it didn't get any better. I didnt have a multimeter at the time so I never got a chance to check for parasitic draw. I replaced the alternator and the issue seems better, but not fixed. It can sit for a few days before it goes flat now. Today I tore the alternator to battery harness apart again and I noticed that what
@LandLocked93 said was somewhat true for mine, the heat shrink had fallen apart and the terminal crimp was very close to the alternator case so I re-heat shrinked it. I also noticed that the wiring on the connector for the back of the alternator had some missing shielding in it so I wrapped them in some aviation grade antichafe tape and then put a new wire shield over that. I did some resistance checks on the wires and found everything to be in good order so far. Will report back if I find anything else.