Ok, good news, that was the issue. The first and second pin appendages were not making contact when the flap closed or open, no continuity. I must have bent the #2 pin when I pulled the plug originally. The two appendages are supposed to make contact when the air flap is open and not make contact when closed, this is the continuity circuit that ppc was referring to before. After bending the #2 pin appendage to where it just made contact with the #1 appendage when the flap is in open position and not touching when flap is closed. Continuity reading between #1 and #2 pin when flap is open was .005 to .010 depending on where I held the meter leads. It read 0 when flap was closed.
After reassembling everything in the cruiser, it cranked up and held idle. After a short test drive, throttle response was better than before, and Idles at just above 800 rpm steady. So big thanks to ppc, slow squirrel and slow95z for all your help on the matter.
The CEL is on though, I will have to do some forum searches on how to reset.
On another note, the reason I was even messing with the engine compartment to begin with was to address a charging issue. The last time I drove the cruiser into town, I almost didn't make it back. Several random dash lights(cel, at temp, brake, and voltage light) came on when I first cranked it up, but went away when I revved the throttle. Watching the voltage guage on the way back it was dropping fast all the dash lights came on and the guages stopped working. I only had 10% charge left when I got home. So there is a charging issue that I now have to work out. After looking around saw the neg battery terminal clamp had a broken bolt so replaced and recharged. About then I got bored waiting and decided to do the VAF cleaning. So now that is back running, I will test the alternator to see if that's the issue or maybe the voltage regulator. The saga continues.....