I've looked into this briefly to prepare for an EGR removal as well. The glow plug light in the 95-97 HDJs w/EGR is controlled by the emissions ECU which has a couple inputs and outputs, controlling a number of of VSVs for the emission system but it also does a few other things such as running SICS/BACS, the tach, the intake heater and dash indicators for glow plug and turbo pressure. So if removing/disconnecting any part of the EGR system that is part of a diagnostic circuit you'd have to make sure to keep the ECU happy, either by keeping the relevant circuits connected or using bridges/resistors to "simulate" normal operating conditions to prevent DTCs.
There's a supplemental 1HD-FT emissions control repair manual ERM111E which would be important to look into details of specific DTCs and operating conditions, unfortunately I don't think its available for free online so one would have to get into the Toyota TechDoc system for it.
Update: Found that
@gilmorneau has uploaded pictures of that manual here:
De-smogging a FT - injection pump question - https://forum.ih8mud.com/threads/de-smogging-a-ft-injection-pump-question.1292707/#post-14730599