You won't have to use the bottle jack to align, but sometimes it is easier to make fine adjustments by flexing just one end of the spring with the bottle jack as opposed to moving the whole axle with the floor jack. FWIW, I have changed out every bushing on one of my trucks by only using a bottle jack between the spring and frame. No floor jack. Didn't even jack it up. Never removed a wheel. One bushing at a time.
Drill three or four holes in the bushings. Then drill a hole at the outer part of the bushing near the spring eye. The drill will try to "walk" itself around the spring eye. Let it do its thing. Between the drill and a hammer and socket, the bushing will come out.
Hanger bolts and bushings will fight you just the same.
If you want to witness an entire suspension swap being done on a 40 in an afternoon (and even lend a hand if you so desire) come out to my place on Sunday. You'll get some good tips and maybe learn a trick or two.
HAMOM - Sunday, 2/16 | Matthews, NC If you are interested, PM me and I'll give you the address.