The nice thing about the boost controller is that it prevents the wastegate from starting to open too early. Does the threaded actuator rod accomplish the same thing? I adjusted mine a bit to shorten the rod but I felt like I was putting a lot of strain on the spring in the diaphragm.
Shortening the wastegate arm does it better.
A boost controller can only interrupt air pressure to the can, the wastegate can still be opened by exhaust pressure. But if you shorten the rod you are increasing the preload on the wastegate which can better hold it closed against exhaust pressure.
IMO the talk about wastegates opening too early is just talk. The wastegate can't open until the actuator lets it, placing a bike pump with pressure gauge on the wastegate air line will show you when it starts to open. Use this for a starting point, then fine tune to suit using your boost gauge when driving. Afterall, it's the driving result that actually matters.
Don't worry about the spring, it's designed to be pushed flat and survive.