peiserg, from what I can infer from your original post is you need a bit more clarification for us.
If you intend to only run front discs, which all 2nd-Gen 4Runners up have then yes.
However, and this is important, if you intend to run discs front and rear, you must use at least an 80-series (1991-1997) Land Cruiser master cylinder as it is intended for that purpose and has the residual valve needed for proper operating pressures to the rear discs. I believe that might be why you were looking into the Supra/LC masters..
4Runner master cylinders do not have this, and no amount or retrofitting will change the way those masters are designed.
If you want discs on all 4 corners, Land Cruiser master.
If not, 4Runner master, 2nd-gen's had 2 sizes, early models w/ the 1", and 93-95 with the 1-1/16". Both are 4 bolt, the 96+ appear to only be a 2 bolt setup for mounting to the booster.
To add a little complication to the matter, some people prefer the 1" master for single disc operation on earlier rigs as it builds pressure differently, while some people, when their rig gets at or near 4,000lbs prefer the 1-1/16" master.
Also, IIRC the 93-95 4Runners and Land Cruisers share similar double diaphragm boosters, easily identified by the additional 1" in face distance.
I hope that clears up what was missing and gives a better answer, if not go onto either Marlin Crawler or Yodaman's sites, or call either entity for better tech answers.
Whatever you go with, find a safe area to test your braking system out, as little changes can lead to big changes in stopping habits, from anything to unintentional full lock-up to unbalanced brake bias causing the rear end to swing around in a panic or hard stop.