You're going to want to check out
Parts Express: Speakers, Amplifiers, Audio Parts and Solutions - https://www.parts-express.com/. Most 6.5 subs typically struggle to fit in the small factory box. You'll likely have better luck looking for a woofer component speaker. With that being said, a bolt in, no mod, no trim replacement with confirmed improvement over a refoamed ML sub, I have yet to identify. (I've spent countless hours looking into this)
Many people have modded to run the SKAR, but it's poorly optimized by the Mark Lev amp. You're likely looking at about 30 watts RMS to power the sub. The SKAR is rated for 200... it will work, but probably be underwhelming to anyone with an ear for audio. On top of that, the factory setup is tough to produce deep/loud bass. There's just not enough air to move and power from the factory amp. The ML speakers were all designed and balanced to create a good sound.
From the research I have done and searching through IH8MUD, here are some general specs I would recommend.
Factory flange mounting spec found in a different thread: Thanks
Pucker5
Ring spec: 6.75" outside diameter flange, 5.75" inside diameter flange = 0.5" flange width = 6.25" centerline of screws
His Suggestion
Parts Express Search Filters/Specs
Diameter: 6.5 inch
Depth: 3 inches (SKAR sub is 3.52 requiring trimming the webbing on the back of the sub box to fit.)
Ohm: 8 (Or 4 if you find a dual voice option like the SKAR above)
RMS: 30-40
My Current Pick
RMS rating of 30, High sensitivity of 94.8 dB and a 4.6 XMAX. I'd like to think this is about as good as it gets. But Pricey.
Cheaper 2nd Pick
This woofer seems to have the specs to be an improvement and match system capabilities. Bang for buck.
Should Bolt In
Specs not as desirable to me, but the mounting flange looks like it matches the factory speaker pretty closely. Specs are okay. I'd assume it's next to bolt in.
Hope this helps!