I'm still trying to figure out a couple ones that I don't see in the emissions manual, but will do some more searching on here to try and figure them out. I know one is for the A/C idle up and isn't covered in the manuals. The other is on the passenger side under the air cleaner. I've got some of the connections made, but can't find the others. If anyone has a diagram or a picture of that, it would be really helpful.
The routing for the A/C idle up is shown on the second page of the attached PDF. The vacuum source is manifold vacuum where the brake booster connects. The valve is mounted to the left side (drivers side) fender well.
Under the air cleaner, there is a VCV that clips under the passenger side of the air cleaner. It's a VCV that's used to purge the distributor cap. It's shown at the top of the first page in the PDF file.
Also on that side of the air cleaner is a temperature valve (HIC valve). It's shown on the drawing linked here: http://www.sweetillusions.org/toyota/fj60_vacuum_routing.gif