I have been experimenting with all of this lately. I have a custom airbox with 4" inlet in the fender that fits a ~2005 Duramax panel filter. I ran that basic set-up for about 40k miles. It worked fine and had what I would call expected turbo lag with the PDI Intercooler.
My biggest problem with it was that I was getting way too much dust into the airbox and clogging the filter extremely frequently (lots of desert driving doesn't help of course). So after a ton of research I picked up a AEM Dryflow filter that is washable (at least I'm not blowing $20/mo on new Fram paper filters). I have yet to really test it, but it did increase flow quite a bit. I now have significantly less boost lag than before.
At the same time I determined that my dust ingress was mainly due to a large triangular hole at the rear of the tire caused by removing the factory steps (which have a plastic piece that covers this). That threw all the dust kicked up by the front tire directly into the fender, where the turbo was sucking. So I blocked that off to reduce the dust but that created a significant flow reduction and I could hear air whistling through the cracks around fender at full boost. Sigh.
Unfortunately I was only a couple of days from leaving again for the next 10mo living in my truck and there's no time (or funds) to order a big stainless snorkel yet. So I pulled the corner marker light to see how much that improved airflow and WOW. Almost no turbo lag through the complete RPM range. I had no idea how much even my 4" intake box with big panel filter was restricting. So I jury rigged an old busted signal housing into an air duct. It's ghetto has hell but the increased airflow is great. I have yet to test it in monsoon conditions but I figure that I can always cover it with painter's tape for periods if I'm experiencing a hurricane or biblical rain.
I cut most of the interior of the marker housing so that i have a lot of air flow into the fender & repositioned the light (switching it to orange LED ). It super Mad Max and very temporary. Next year I will spring for a 4" snorkel. Of course with et Campteq pop top I have to get a front facing snorkel as well, which is even harder to track down/more expensive.
I do also had a motocross style hydrophobic pre filter sock on the end of the airbox intake as a pre filter and safeguard. I'll report back on the AEM Dryflow performance in a couple of weeks when I get some real desert driving in.
But for those curious about their airflow, try pulling your marker light housing and taking a run and see if you can feel any difference.