Your right about the one stop operataion. If I end up in Van for extra days I will not save any money. I can do some of the work myself, front bearings, brifs etc.. when I get home. The BEBs I will need to get done in Van (not sure I can take that on) as well as anything to pass inspection and get rolling. Thanks for all the advice you guys are really helping me out.
First off, I have always told people that ask me about importing their JDM to be ready to add another $2-3K on the price to get it here to get it on the road properly.
If you are getting it inspected and registered in the lowermainland, then everything will be done here. ATEB doesn't have any faster access to parts than EBI. Most everyone is getting much of their JDM specific parts through John Hamilton at Rocky Mountain Imports. If he has it, then it goes out on the next bus. If not, then it has to be ordered in by air from Japan($$$). You may want to think about what you will do if the shocks are shot (as they often are). If you are planning a lift, then it is the perfect time to do it. No sense putting money onto replacement shocks for a standard height when you want to do a 3" lift soon.
I think you should plan for a few days in Vancouver to get the work done on it to pass inspection and to make it road worthy. You should also count on spending some decent coin to have a shop do it all - probably over $2k without the lift. Why not take John's list and get a quote from ATEB and EBI.
If you decide to just do an A-B permit, given your drive back, you must have the BEB, cooling system, and all lubricants done. Otherwise you are taking a big gamble. Also, check for loose wheel bearings and have them repacked (replaced if required) and tightened. A guy I know had Steve do the same with his Safari and drove his truck back to Winnepeg on an A-B certificate.
Another option would be to have it clear customs and then have it trailered to Nelson, where you would be free to work on it yourself. There are still lots of lumber haulers heading back up into the interior without a load. You could contact one of the local mills to see if they can put you in contact with a few O/O truckers to set price. Like I said, John Hamlitlon will happily sell and ship you the parts and the non-81 specifc parts are available from Toyota or better yet online from places like Summit racing and Rockauto. Shops like BC Bearing should be able to get you bearings and seals if you give them the part number. There are some good write-ups here on doing BEBs. In terms of difficulty, they don't look too hard to do. Definitely nothing worse than diving into a knuckle.