Headers are a waste of money - they will gain you no significant performance improvements and will generate alot of heat. The stock exhaust manifold on an FJ62 is pretty well engineered. The rest of the stock exhaust system is just plain stupid, with two expensive catalytic converters and pipe that goes up and down and all around, with several sections exposed to trail hazards.
Take your truck to a small shop that does custom exhaust work and tell them what you want (see below) and they will make it happen. Don't go to Midas/Meineke/etc. as most of them can only do bolt-on work of existing parts, won't be willing to change your basic configuration (two cats, etc) and will charge you much more for an inferior final product. There are a few of these chain shops that do custom work as well and will do a good job, but only a few.
The following exhaust configuration is tried and tested on many FJ62's, including my own:
- stock exhaust manifold
- custom y-pipe into a single hi-performance generic catalytic converter (Catco makes a nice one, available from Summit Racing)
- all 2.5" pipe (if you go larger you will lose some low-end torque)
- free flowing muffler of your choice - the custom exhaust guy will have an inexpensive one to recommend
- keep everything going straight back, and keep the pipes tucked up into the frame
- reinstall the oxygen sensors in the y-pipe arms at approximately the same locations along the pipes that they were in before. If your oxygen sensors are old (more than 100K miles), replace them with new generic ones from
http://www.oxygensensors.com
- tailpipe straight out the back, but cut just before it reaches the bumper, so it doesn't get pinched on the trail
good luck!