Junction Block
It does not matter what position the wires are in on the junction block connector. They are all being tied together anyway.
Fusible Link
If you have burnt connectors on the fusible link, and can buy a new one, I would buy it...
First: I am not familiar with the FJ60 wiring, so the following statement may be incorrect. Someone more familiar with FJ60 wiring correct me if I am wrong.
Second I responded to your email with the part # and price for that 6 pin female...