Hey guys, I'm the proud new owner of the 100 series mcalvarez73 is talking about. I'm going to recap the issue to make it helpful if anyone comes across this in a search...
All power windows (except for the two rear vents) and moonroof, all power seats, and all power locks were out.
The fix: the 40 amp fuse under the left kick panel labeled "Power"
It was the only fuse I didn't specifically check when I went down under with a flashlight. Saw over in yotatech that some guys had similar issues with 4runners and the 30 amp fuse in those so took it out to look at it.
Thanks for the help guys!