Well, this hits close to home.....

I have, in fact recently been down this road and will try convey what I found out.....
In my case I used pistons from EA (Diesel Power Parts brand) which seam to be fairly common choice in the aftermarket and on the box it clearly states that piston protrusion is not to be trifled with! I did take notice to this but really didn’t think much of it as I was getting the machine shop to do the short block including skimming the deck and boring to first oversized. I just assumed that with the factory 12HT FSM and warning stickers if there was an issue I would have heard about it. As it turned out they called me to come get it which I did and back in my shop I realize that there was what appeared to be an awful lot of piston hanging out of the bores and written on the deck was .036” which is .91mm.
DPP and EA spec sheets have there protrusion parameters a little different from each other but both less than the .91 that they made it.
I asked my machine shop about this and and I got this response:
I am trying to wrap my head around why the engine had a protrusion spec of .034” with the original pistons. How was this engine running being out of spec this much? You confirmed that the original gasket is a standard thickness? Most pistons can be machined down to accommodate a correct piston protrusion spec, however this is very uncommon as the aftermarket pistons are usually a direct match. I have never heard of a piston manufacturer making pistons taller in order to be cut down to size.
At that point I was not sure what to do as I was now trying to figure out if the protrusion was pretty much the same with the new pistons as the old how is it that DPP and EA want it to be less, what to do??!
I asked EA about this and got this response:
Hi rob
These pistons are made to the highest protrusion specs so to cover all engines
The specs above are to suit our pistons
Sorry not stocking any thicker style head gaskets
So what the machine shops do in Australia is do a dry fitment as you have done to get a correct measurement
And then machine the top of the pistons to get the correct clearances
So at that point after trying to find a factory spec in the FSM or anywhere else for the 12HT piston protrusion and not having any luck I made the decision to take the whole 9 yards back to the machine shop and have them machine the pistons as
@Hulsty and others had suggested and they were able to get the PP at the top end of the DPP spec.
And in the end all is good, the engine purrs along quite nicely!
My own hypothesis on this is that DPP wants a lower specification for the protrusion due to possible greater piston expansion at higher temps with the Alfin pistons? Not really sure but my 2c is that it’s a good idea to follow the manufacturers specification, that is if they include it in the box!
I’m not so sure about @relaxedcruiser’s method of achieving this reduced PP but I think he’s on the right tack!
Cheers guys, I hope the loooooong explanation of my situation was worth the read!
All the best in the next Decade! The last 10’s been a wild ride!
Piston set I got from EA, this is a pic I found on mud, mine were first oversized at .50mm
The don’t screw it up sticker......
The EA spec from 1999
The DPP spec sheet that EA sent me as the latest spec Feb 2005
The finish product! ❤