I did this same procedure and checked pedal height and Freeplay according the the FSM when I was done and did not have to perform any additional adjustments.
I had a soft pedal and 2nd pump issue on my 1998 LX. Everything else on the brake system was working as expected and checked out as operating properly (pump run time, brake pedal height, etc...). I decided to try the master cylinder piston replacement to fix these issues. I just completed the...