Ok back on track,
As earlier I think your problem is on the red/white somewhere between pin 11 on the large connector next to the fuse box (EA1) and the splice in the dash E12 ( I1 on the 96 ewd )
Could be:
1. The female connector pin 11 on the EA1 next to the fuse box, but you did not see any corrosion or any other damage ,
2. Could be damage inside the female side of EA1 where you could not see where it connects to the red/white wire
3. The red and white wire could be damaged in the harness along the top of the fender to the firewall, not likely but easiest to check.
4. Red/white wire could be damaged from where it passes through the firewall and on to the E12 splice, this would difficult to get to
5. E12 splice could be damaged (also difficult to get to)
It may be a good idea to start with the harness along the top of the fender, take it out of the tape and split loom so you can inspect the length of the red/white wire, this is easiest to get to,
there should also be a way to release the female pin11 from the connector and pull it out (from the connector side probably) once there is some slack to work with and examine the connection, but I have never tried to release these Toyota water proof connectors, if you dotn know ahead of time it is easy to bugger up the connection
Before you go with the following steps (wire damge and dash teardown) I would like to get to the switch connector on my cruiser and make sure that grounding pin 13 and 14 on my truck make the headlights come on and that we have the right connector and pin-out, I am going to try to do this monday night
If the under hood stuff checks out before going in the dash you could try a slightly destructive test by piercing the red and white wire with a sewing pin (trying to damage as few strands as possible) and then short the sewing pin to neg post, if the low beams come on everything under the hood is OK and dash has to come apart