Final update.
Custom fancy double cardan shaft was never right. The drone of the vibration at 65+ never sat right with me. It was tolerable at first after its trip to the driveline shop, but was still nagging at me and my OCD.
Put in a brand new OEM toyota shaft and its as smooth as it should be. If anyone wonders, yes, I'm a dumbass and spent $1500 on custom shafts and work when I could have just put in a $500 OEM shaft and fixed it.
Anyone wanna buy a custom double cardan shaft? It massages your back as you drive!