I am about 95% sure it could be wired up. I have no idea what the connector looks like on the 3FE but wiring alternators is relatively basic. One wire, usually coming from the ignition gives them initial power to excite them until they get up and running. A second wire is a "sense" wire that is connected in a 12 volt circuit so the voltage regulator can tell (sense) the voltage value and adjust. The third wire is just for the idiot light. Sequoia's have a fourth wire that goes to their computer but this wire is not needed if the alternator is going to be used on a different vehicle. Lastly, a large charging wire just goes from the alternator to battery positive so that one is easy.
Before I did this Sequoia adaption I had adapted a 100 amp Delco on the cruiser. It was not popular since it was not a Toyota part but it shows using different alternators will work. If you care to look, I did a thread on it years ago.
I do not have access to a 3FE to see what would be involved and seeing what could be worked out. Physically, it would be making sure the large case alternator would fit in there somewhere, get the pulleys to line up, and ideally using the same belts and adjusting system.
To answer your question 3FE alternator probably has 3 wires, the Sequoia has 4; but the one would not have to be used. It would be best to buy the Sequoia wiring connector and do the wiring using that connector. I hope this helps.
Bill