Little update. I had my new 4.88 Nitro gears installed recently by a local shop (which I won't name) that I've had generally a good experience with in the past. I had considered doing the gear setup myself but I'd only be able to work on it a couple hours a night after work and it would have likely taken me most of the week to get it all buttoned back up. So for the sake of time I had this shop do the work since it was only going to take them two days. That two days turned into 3 weeks for a number of reasons that I can't even remember at this point. When they said it was done, I went to pick it up. During the drive home, there was a distinct noise from the rear diff. There was also a leak at the front pinion seal. It was frustrating especially after how long the truck had been at the shop (which is what I wanted to avoid by taking it to the shop in the first place), but I called the shop and they had me bring it back to take care of the issues.
I got a call saying that the only noise they could hear was tire noise. I chuckled because the noise was obvious and there should be no way they missed it. So I went to the shop and took a test drive with the tech to point out the noise. I was able to point out the noise in the first 30 seconds of the drive which the tech acknowledged and said he'd have to pull the diff back apart. Back into the shop.
After a few more days I get a call saying that they have had multiple techs looking at it to verify the setup was correct and backlash etc was right, but they could not get rid of the noise and said it must be a problem with the gears. So I got a hold of Carl @ Nitro and he was awesome. While it meant I'd be without the truck for a bit longer he had us ship the diff to him in Washington and said they'd go through it and make sure everything was just right. Turned out that there was a bad bearing (could have been from bad preload during the install at the shop) which Carl replaced and for good measure he swapped out the ring and pinion as well just so that he knew there would not be other issues. They sent it back to the shop and everything was put back together. We were now 6 weeks after I had originally dropped it off. I drove home again.
There was now noise coming from the front end. In addition, the passenger side rear axle seal was leaking and there was damage to my front driveshaft. It was pretty obvious that the dustcap at the splines had been spinning against the front swaybar, which is not possible during normal driving or at full droop. My only explanation was that the truck must have been moved at the shop with the diff end of the front shaft detached so it was hanging against the swaybar. I was getting pretty irritated at this point. I took the driveshaft to a local driveshaft shop that built it for me a few years ago (DC front shaft) to have them check the ujoints etc to rule out the driveshaft was causing the noise. The driveshaft/ujoints were all good and the damage was limited to just the dust cap that they replaced free of charge. I still took the truck back to the shop to have them fix the axle seal.
I had a Moab trip coming up that weekend and told the shop I was still getting noise from the front end and would bring it back in after my trip since I had already changed the dates of the trip twice because of how long this "two day job" had taken. I still had a couple days before the trip and I decided I'd dig into the front end myself to see what I could find. I picked up a front end rebuild kit from Cruiser Outfitters and tore it apart that evening. More disappointment. The driveside wheel bearing was WAY to tight and by my estimation was torqued to about 60ft/lb and the bearing was cooked. The knuckles were almost totally empty with very little grease. The passenger side wheel bearing nuts were not much more than finger tight and I estimated set to ~12ft/lb at most. So I tore the whole thing down and replaced all the seals and all 4 knuckle bearings and wheel bearings. I notified the shop of the condition I found it in that was clearly carelessness on their part.
The end of the story is that the front end is all done correctly now (by me) and the noise seems to be gone, go figure. Needless to say, I was angry and frustrated with the shop for the shoddy work and for 6 weeks of time to do a 2 day job. However, I have to give major props to Carl and Nitro for stepping up and taking care of the diff even when the issues with it were likely not even their problem. Excellent customer service from them! Same goes for Six States for taking care of the driveshaft free of charge, and for Cruiser Outfitters for having a good knuckle service kit that makes that job much easier.
Glad that's all over!
Damaged driveshaft
This is how I found the knuckles
On the up side, the Moab trip was great! Really enjoyed the lower gears on the drive and on the trail.

Per usual, the sliders, bumpers and some control arms got some rockrash. My SCS wheels got a bit of rash too, but no biggie.
