Sounds like your strategy for electronic & mech simplicity makes sense. I'm not questioning your choice just wondering if it was an option from your builder. 6bt ( also 4bt) are solid power plants, very reliable and good on fuel.
There were considerable refinements from gen1 to gen 3, mainly increased Hp & torque, improved injection system, Econ, and seemingly smoother and quieter running. But maybe the 3rd gen would require up fitting driveline components to manage the additional torque & hp it puts out, or require more electronics to detune the engine.
Anyhow- looking forward to seeing how your Cummins upfit turns out.