I never followed up with how my project finished out. I did end up ordering a full exhaust system using the Bosal brand. The '96 down pipes do fit '94 Manifolds. Mine were bent from shipping a touch but I bent them back and they cinched up tight and never did leak. I used a block off plate for the upstream sensor bung and the down stream sensor bung after the post CAT. I ordered 2 Toyota bungs and welded them equal length 8" from the Exhaust manifold. The Bosal system didn't line up well with the rear exhaust mount above the rear axle. I ended up getting a universal mount and bolted to an existing frame threaded hole. They system passed emissions flawlessly, readings were better than I have ever seen it with 194K miles. The truck runs smoother, seems to have a bit more power and no CAT rattles (mostly from less-restriction of old CATs). No check engine lights and the emissions tech never was the wiser for a visual inspection.
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Is this the down pipe you used?
MagnaFlow® - Standard Direct Fit Catalytic Converter