Got the part that was missing for the transmission, got the hydraulic throw-out bearing installed and the transmission onto the bell housing, and 2/3rds of the drivetrain hanging in the frame.
This is where my inexperience really bites me. There are all kinds of things to consider when setting the engine I'm not super familiar with. However, with the headers on, there's no moving it side to side, so one complication gone. I've got it set pretty much as low as I think it can go. It will only move up from where it is.
The transmission wasn't here the last 2 weeks (waiting at the trans shop for that part) and I thought I knew how the mount worked, but when I slung it in today, I realized I had almost everything wrong about the width of the mount and the distance from the mounting point to the back back of the trans where the transfer case mates. So, that was almost a 'f**k me' moment. But, it all worked out.
One interesting thing is that in an fj40, which is what I'm used to, the transmission mount is always below the frame rails a bit. and I kind of assumed that was true with the M37 too. But ... with the motor setting as low as it can with 5 degrees slope back, the trans mount is still 3" above the bottom of the frame. The good thing about this, is that it puts the trans mount above the links enough that they don't interfere with each other - which is a plus. And the links don't have to move from where I had them.
however, apparently I lost the studs required to bolt the Atlas to the transmission while waiting to get to this point. So, I can't attach the transfer case today. Which means I can't move the cab back into position to check interference - which I really wanted to so.
So, I'll use the plasma table to cut some quick and dirty motor mounts. I wish I had some Advance Adapters mounts, they'd be perfect for where it's sitting. But I'll make what I have work and get the motor enough tacked in that I can free the gantry up.
The crossmember in the image below is about the bottom of the radiator. I'm curious if people think pan is hanging too low and needs to go up.