yes yes yes, I know, I know... I need larger tires! I will be going to 33" on the next set. I know everyone is going to say to go at least 35" but I am staying more in the Overland-Spec which is around the 33". I drive it daily. I drive it on long trips and if I can't get there on 33's, I kinda' don't need to be there.
My big questions ahead after the 33" tires are:
1] What gear ratio? 4:88 or 4:56's? What gear company?
4.88 you will regret only getting 4.56's and will make it more driveable.
2] Get rear disk brakes with rear axle swap from SF to Full Floater - what year FF?
This one is entirely up to you, doesn't matter on the year there is no difference. You would get a bit better brake performance and the ability to drive home with a broken shaft. I did mine because I stand the chance of breaking a rear shaft. With what you do I think a SF will be fine.
3] Lockers while doing gears.
Yes by all means, you will have to pay bucko $$$ to have someone go in there twice.
4] If I can not get the FF rear axle now, but buy my gears+locker, will the gears+locker from SF axle fitment also fit into FF axle later down the road?
99 percent sure it will. I believe the 3rds are interchangeable.
5] Do I need 16" rims to fit over disk brakes?
Yes and no, with the proper back spacing 15's can fit with some grinding on the calipers
6] Do I need double cardigan driveshafts?
Cardigan
I don't think you will need it with what you have
I have lots to figure out and decide upon!
My big questions ahead after the 33" tires are:
1] What gear ratio? 4:88 or 4:56's? What gear company?
4.88 you will regret only getting 4.56's and will make it more driveable.
2] Get rear disk brakes with rear axle swap from SF to Full Floater - what year FF?
This one is entirely up to you, doesn't matter on the year there is no difference. You would get a bit better brake performance and the ability to drive home with a broken shaft. I did mine because I stand the chance of breaking a rear shaft. With what you do I think a SF will be fine.
3] Lockers while doing gears.
Yes by all means, you will have to pay bucko $$$ to have someone go in there twice.
4] If I can not get the FF rear axle now, but buy my gears+locker, will the gears+locker from SF axle fitment also fit into FF axle later down the road?
99 percent sure it will. I believe the 3rds are interchangeable.
5] Do I need 16" rims to fit over disk brakes?
Yes and no, with the proper back spacing 15's can fit with some grinding on the calipers
6] Do I need double cardigan driveshafts?
Cardigan

I have lots to figure out and decide upon!