My ex wife was a shorty too and had difficulty getting in. Installed a Con Fer glove box grab bar just for her. 25 years later she's long gone but I still have the bar, it really does help passengers get in and out. 
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Any suggestions?
It appears you purchased a South American model FJ40 with a classic SA fiberglass top.I just bought this a couple of weeks ago so I don't know whether the top is "stock" or aftermarket. I suspect aftermarket.