OK, so the battery is going dead after two days of sitting and not being recharged by the alternator.
Assuming that the battery is good (local auto parts stores will often offer free tests for both the battery and the alternator), then there is a short somewhere that is drawing power from the battery with the vehicle off.
Here is a wiki that shows the steps for how to test the OE circuits at the main fuse box:
http://www.wikihow.com/Find-a-Parasitic-Battery-Drain
With the engine
OFF, if you disconnect the negative terminal of the battery and install an ammeter (capable of handling up to 20A) in line between the negative battery post and the negative battery cable you just removed. If the ammeter is showing more than 25-50 mA (milli Amperes), then there is indeed a short somewhere in a circuit.
If you remove a fuse at a time at the main fuse box, then the circuit that shows a drop down towards 0 A with it's fuse removed is going to be the suspect circuit.
A short in the voltage regulator on the alternator might also be the cause, so if you disconnect the low voltage wires to the alternator (just like you did for the fuses) and reading on the ammeter drops towards 0, then most likely a bad voltage regulator on the alternator.
The Dome fuse circuit that runs the cooling fan and the dome lights is not switched through the ignition switch, so it is 'hot' even when the engine is off...so a short here would certainly drain the battery.
Do you have a multi-meter that can read up to 20A?