if it's local perhaps I can help later this year(I need to get stuff finished on my ride before i touch anyone elses unless it's Sage or Colin or Eric's before the event). if it's not local perhaps I can help recommend someone in the area of the truck to help. If I recall it was in TX? there are a bunch of 3fe conversions in Tx..
the wiring is the biggest issue on a 3fe conversion. I know because i probably have over 40 hours in my wiring and i'm technically not done. I'm done for now but will finish it up after other stuff is mounted. Why someone would add in a bunch of extra switches is beyond me. one kill switch to the ignitor would suffice.
Without knowing how they built the harness or what maint is done I wouldn't know much.
slowing to a stop and dying would probably be fuel related or vacuum related. have any diagnostics to the MAF or fuel system been performed? I have spares of most things but you will have to leave a deposit. I will not ship my stuff off anymore. Lost too many things and I need my spares.
It'd start by following the FSM for the MAF, and see if there's a vacuum leak.
These things will run with minimal wiring.. to properly diagnose the wiring it would need to be totally removed, de-loomed and checked. Costly to say the least.
Regular maint? like a vacuum leak, MAF, FPR or fuel pulsation dampener can be easily checked. Other things like what fuel pump is being used and psi of that? return line? in take, out of tank? Fuel filter? etc..
I need MANY more details. Honestly who did the conversion and do you have any info on that? Did they butcher the harness or keep the 62 harness.. What year harness and engine? FJ62 or FJ80.. yes there is a difference.
Mine.. if you disconnect the harness from the engine, connect 2 wires and an ignition switch in a wagon and I'll get their engine to fire.. I tried to keep EVERYTHING intact except the smog pump and i'm still not really done.. But it does fire up.
Is it idling rough? hard to start? Lots of questions..