That is a nice setup...I had the OEM-style but stainless pins, so I didn't worry too much about shaving, but those would def be easier for future removal. I don't plan on pulling doors much, but good info.
The only other "unintuitive" minor assembly-order item I recall was around the battery support, and that horizontal tray that tucks under it. I did one first (support?) but ended up removing it to more easily install the other...it wasn't impossible, but it was faster to remove/reinstall than fight with some blocked access.