With 39's I think it would be a good idea to examine what you want ie engine,gears,tranny,what kind of lockers(if any),and the such.To figure that out you need to know how you will be using it ie looking cool,dune running, mudd bogging,rock crawling,a little bit of everything?Right now you can start with a clean slate and learn from those who have gone before you.Having a full Toy drivetrain is indeed ultra cool but it might be best to find a pre IFS 1 ton chevy pickup or suburban with a TBI engine and your choice of tranny.Then....swap in the whole drivetrain.You could run a Detriot in the back(14 bolt FF) and an ARB in the front(Dana 60) put the axles under the springs,open up the fenders a little (a lot)and put your 39's on it and call it good.It would be some work and you would have to do stuff like cut the floor for shifter find a bigger radiator and some stuff like that but it might be easier,stronger and even cheaper (read Less breakage)in the long run.If your just going to be running 37's and you have a light foot or plan on keeping you 6 cylinder ,moly shafts should be more than adequate.But if you want 39's and a strong V8............I think you know what I mean.Do some searching on this site and read some of the tech stuff,it might help you get a better idea of what you need.
-Rob